Parameter	Value
hashtag	#SingleCellOpenProblems
start_day	2021-03-29
end_day	2021-03-31
timezone	America/Los_Angeles
theme	theme_light
accent	#ff4a55
accent2	#cccccc
kcore	2
topics_k	6
bigram_filter	3
fixed	TRUE
seed	1

Introduction

An analysis of tweets for the query #SingleCellOpenProblems related to the Open Problems in Single-Cell Analysis Jamboree 2021 from 2021-03-29 to 2021-03-31. A total of 45 tweets from 27 users were collected using the {rtweet} R package.

1 Timeline

1.1 Tweets by day

1.2 Tweets by day and time

Filtered for dates 2021-03-29 - 2021-03-31 in the America/Los_Angeles timezone.

2 Users

2.1 Top tweeters

Overall

Original

Retweets

2.2 Retweet proportion

2.3 Top tweeters timeline

2.4 Top tweeters by day

Overall

Day 1

Day 2

Day 3

Original

Day 1

Day 2

Day 3

Retweets

Day 1

Day 2

Day 3

3 Sources

Users

Tweets

4 Networks

4.1 Replies

The “replies network”, composed from users who reply directly to one another, coloured by PageRank.

4.2 Mentions

The “mentions network”, where users mention other users in their tweets. Filtered for a k-core of 2. Node colour and size adjusted according to PageRank score.

5 Tweet types

5.1 Retweets

Proportion

Count

Top 10

screen_name	text	retweet_count
DBBurkhardt	Excited to kick off the first day of the Open Problems in Single-Cell Analysis Jamboree today! Thanks @cziscience for sponsoring the event and sending out these excellent gift boxes! Check out #SingleCellOpenProblems at https://t.co/vS5nsJaX1R https://t.co/hffXFZhqUy	10
MDLuecken	The wrap-up of the #SingleCellOpenProblems jamboree with those who managed to survive 1h 45mins of discussions about the tasks, the past, and the future. What an incredible event… 9 tasks (with several subtasks), 40 GH issues, and we’ll see how many PRs end up trickling in :) https://t.co/7WqVlWbh5F	7
vinyard_m	Super excited for the #SingleCellOpenProblems Jamboree starting Monday. Follow progress at https://t.co/HEi8Lo4OMO and https://t.co/TMjEw6RBEB https://t.co/TO7gHMGgSv	5
aalmaander	Over the course of 3 days I’ve had the privilege to be a part of the #SingleCellOpenProblems jamboree/hackaton; an initiative to formalize problems in single cell analysis, define clear tasks/objectives, define gold standards, and also a framework that easily can be expanded. 1/2 https://t.co/DgWpotZUzw	4
MDLuecken	Day 2 of the #SingleCellOpenProblems jamboree saw task teams get into the groove of starting to code up datasets, methods, and metrics in their own forks (impressive dimensionality reduction project board!). Let’s see what pushes to the main repo tomorrow brings! https://t.co/bxze3eFs10	3
emmamarydann	The #SingleCellOpenProblems Jamboree is about to kick off 🎉👩‍💻 Excited to join single-cell hackers across the globe for this collective benchmarking tour-de-force. Follow progress at https://t.co/PNlAiZZTl2	2
DBBurkhardt	Thanks so much to the contributors who attended the #SingleCellOpenProblems Jamboree these past three days. Our Discord server now has 101 members, and we’re now up to 154 merged PRs to our GitHub. You all are the best 🎉🥳👏 Follow the project at: https://t.co/zKUqdX8Lz9 https://t.co/YVETWPwilO	2
lazappi	Day 2 of #SingleCellOpenProblems kicking off in Europe! If you aren’t directly involved you can still follow along and contribute to the GitHub issues https://t.co/1XlShrcKu8.	1
ann_chen0	Really excited to be a part of this Jamboree! Thanks to all the organizers who put this together. #SingleCellOpenProblems https://t.co/sIBrsOrlKD	1

Most retweeted

5.2 Likes

Proportion

Count

Top 10

screen_name	text	favorite_count
MDLuecken	The wrap-up of the #SingleCellOpenProblems jamboree with those who managed to survive 1h 45mins of discussions about the tasks, the past, and the future. What an incredible event… 9 tasks (with several subtasks), 40 GH issues, and we’ll see how many PRs end up trickling in :) https://t.co/7WqVlWbh5F	43
MDLuecken	Day 2 of the #SingleCellOpenProblems jamboree saw task teams get into the groove of starting to code up datasets, methods, and metrics in their own forks (impressive dimensionality reduction project board!). Let’s see what pushes to the main repo tomorrow brings! https://t.co/bxze3eFs10	41
DBBurkhardt	Excited to kick off the first day of the Open Problems in Single-Cell Analysis Jamboree today! Thanks @cziscience for sponsoring the event and sending out these excellent gift boxes! Check out #SingleCellOpenProblems at https://t.co/vS5nsJaX1R https://t.co/hffXFZhqUy	35
emmamarydann	The #SingleCellOpenProblems Jamboree is about to kick off 🎉👩‍💻 Excited to join single-cell hackers across the globe for this collective benchmarking tour-de-force. Follow progress at https://t.co/PNlAiZZTl2	19
vinyard_m	Super excited for the #SingleCellOpenProblems Jamboree starting Monday. Follow progress at https://t.co/HEi8Lo4OMO and https://t.co/TMjEw6RBEB https://t.co/TO7gHMGgSv	14
aalmaander	Over the course of 3 days I’ve had the privilege to be a part of the #SingleCellOpenProblems jamboree/hackaton; an initiative to formalize problems in single cell analysis, define clear tasks/objectives, define gold standards, and also a framework that easily can be expanded. 1/2 https://t.co/DgWpotZUzw	5
DBBurkhardt	Thanks so much to the contributors who attended the #SingleCellOpenProblems Jamboree these past three days. Our Discord server now has 101 members, and we’re now up to 154 merged PRs to our GitHub. You all are the best 🎉🥳👏 Follow the project at: https://t.co/zKUqdX8Lz9 https://t.co/YVETWPwilO	5
lazappi	Day 2 of #SingleCellOpenProblems kicking off in Europe! If you aren’t directly involved you can still follow along and contribute to the GitHub issues https://t.co/1XlShrcKu8.	4
lazappi	Thanks to everyone who contributed to #SingleCellOpenProblems (especially the dimensionality reduction task) over the last few days! 🎉 It was great to meet you all and excited to see where the project goes!	4
KrishnaswamyLab	Excited to see the quick progress on #SingleCellOpenProblems in many tasks! Stay tuned for further developments! https://t.co/K1a9cr7LKu	1

Most likes

5.3 Quotes

Proportion

Count

Top 10

screen_name	text	quote_count
ann_chen0	Really excited to be a part of this Jamboree! Thanks to all the organizers who put this together. #SingleCellOpenProblems https://t.co/sIBrsOrlKD	1
aalmaander	Over the course of 3 days I’ve had the privilege to be a part of the #SingleCellOpenProblems jamboree/hackaton; an initiative to formalize problems in single cell analysis, define clear tasks/objectives, define gold standards, and also a framework that easily can be expanded. 1/2 https://t.co/DgWpotZUzw	1
KrishnaswamyLab	Excited to see the quick progress on #SingleCellOpenProblems in many tasks! Stay tuned for further developments! https://t.co/K1a9cr7LKu	1

Most quoted

6 Media

Proportion

Top 10

screen_name	text	favorite_count
MDLuecken	The wrap-up of the #SingleCellOpenProblems jamboree with those who managed to survive 1h 45mins of discussions about the tasks, the past, and the future. What an incredible event… 9 tasks (with several subtasks), 40 GH issues, and we’ll see how many PRs end up trickling in :) https://t.co/7WqVlWbh5F	43
MDLuecken	Day 2 of the #SingleCellOpenProblems jamboree saw task teams get into the groove of starting to code up datasets, methods, and metrics in their own forks (impressive dimensionality reduction project board!). Let’s see what pushes to the main repo tomorrow brings! https://t.co/bxze3eFs10	41
DBBurkhardt	Excited to kick off the first day of the Open Problems in Single-Cell Analysis Jamboree today! Thanks @cziscience for sponsoring the event and sending out these excellent gift boxes! Check out #SingleCellOpenProblems at https://t.co/vS5nsJaX1R https://t.co/hffXFZhqUy	35
vinyard_m	Super excited for the #SingleCellOpenProblems Jamboree starting Monday. Follow progress at https://t.co/HEi8Lo4OMO and https://t.co/TMjEw6RBEB https://t.co/TO7gHMGgSv	14
DBBurkhardt	Thanks so much to the contributors who attended the #SingleCellOpenProblems Jamboree these past three days. Our Discord server now has 101 members, and we’re now up to 154 merged PRs to our GitHub. You all are the best 🎉🥳👏 Follow the project at: https://t.co/zKUqdX8Lz9 https://t.co/YVETWPwilO	5

6.1 Most liked image

7 Tweet text

7.1 Word cloud

The top 100 words used 3 or more times.

7.2 Hashtags

Other hashtags used 5 or more times.

7.3 Emojis

7.4 Bigram graph

Words that were tweeted next to each other at least 3 times.

7.5 Topic modelling

Top 10 words associated with 6 topics identified by LDA.

7.5.1 Representative tweets

Most representative tweets for each topic

Topic 1

screen_name	text	gamma
aalmaander	Over the course of 3 days I’ve had the privilege to be a part of the #SingleCellOpenProblems jamboree/hackaton; an initiative to formalize problems in single cell analysis, define clear tasks/objectives, define gold standards, and also a framework that easily can be expanded. 1/2 https://t.co/DgWpotZUzw	0.9974536

Topic 2

screen_name	text	gamma
MDLuecken	The wrap-up of the #SingleCellOpenProblems jamboree with those who managed to survive 1h 45mins of discussions about the tasks, the past, and the future. What an incredible event… 9 tasks (with several subtasks), 40 GH issues, and we’ll see how many PRs end up trickling in :) https://t.co/7WqVlWbh5F	0.9974536
emmamarydann	The #SingleCellOpenProblems Jamboree is about to kick off 🎉👩‍💻 Excited to join single-cell hackers across the globe for this collective benchmarking tour-de-force. Follow progress at https://t.co/PNlAiZZTl2	0.9969779

Topic 3

screen_name	text	gamma
MDLuecken	Day 2 of the #SingleCellOpenProblems jamboree saw task teams get into the groove of starting to code up datasets, methods, and metrics in their own forks (impressive dimensionality reduction project board!). Let’s see what pushes to the main repo tomorrow brings! https://t.co/bxze3eFs10	0.9977999
lazappi	Thanks to everyone who contributed to #SingleCellOpenProblems (especially the dimensionality reduction task) over the last few days! 🎉 It was great to meet you all and excited to see where the project goes!	0.9939776

Topic 4

screen_name	text	gamma
lazappi	Day 2 of #SingleCellOpenProblems kicking off in Europe! If you aren’t directly involved you can still follow along and contribute to the GitHub issues https://t.co/1XlShrcKu8.	0.9951751
KrishnaswamyLab	Excited to see the quick progress on #SingleCellOpenProblems in many tasks! Stay tuned for further developments! https://t.co/K1a9cr7LKu	0.9939776

Topic 5

screen_name	text	gamma
DBBurkhardt	Excited to kick off the first day of the Open Problems in Single-Cell Analysis Jamboree today! Thanks @cziscience for sponsoring the event and sending out these excellent gift boxes! Check out #SingleCellOpenProblems at https://t.co/vS5nsJaX1R https://t.co/hffXFZhqUy	0.9971551
ann_chen0	Really excited to be a part of this Jamboree! Thanks to all the organizers who put this together. #SingleCellOpenProblems https://t.co/sIBrsOrlKD	0.9880417

Topic 6

screen_name	text	gamma
DBBurkhardt	Thanks so much to the contributors who attended the #SingleCellOpenProblems Jamboree these past three days. Our Discord server now has 101 members, and we’re now up to 154 merged PRs to our GitHub. You all are the best 🎉🥳👏 Follow the project at: https://t.co/zKUqdX8Lz9 https://t.co/YVETWPwilO	0.9965480
vinyard_m	Super excited for the #SingleCellOpenProblems Jamboree starting Monday. Follow progress at https://t.co/HEi8Lo4OMO and https://t.co/TMjEw6RBEB https://t.co/TO7gHMGgSv	0.9951751

8 Links

Links to GitHub, GitLab, BitBucket, Bioconductor or CRAN mentioned in Tweets.

Name	Tweets	Retweets	Type	Link
SingleCellOpenProblems	1	0	GitHub	singlecellopenproblems/singlecellopenproblems/issues
SingleCellOpenProblems	1	0	GitHub	singlecellopenproblems/singlecellopenproblems

Session info

## R version 4.0.0 (2020-04-24)
## Platform: x86_64-apple-darwin17.0 (64-bit)
## Running under: macOS Catalina 10.15.7
## 
## Matrix products: default
## BLAS:   /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.dylib
## LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
## 
## locale:
## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
##  [1] fs_1.5.0           here_1.0.1         kableExtra_1.3.2   knitr_1.31        
##  [5] magick_2.6.0       webshot_0.5.2      viridis_0.5.1      viridisLite_0.3.0 
##  [9] wordcloud_2.6      RColorBrewer_1.1-2 ggtext_0.1.1       ggraph_2.0.4      
## [13] ggrepel_0.9.1      ggplot2_3.3.3      emo_0.0.0.9000     rvest_0.3.6       
## [17] xml2_1.3.2         topicmodels_0.2-12 tidytext_0.3.0     igraph_1.2.6      
## [21] stringr_1.4.0      purrr_0.3.4        forcats_0.5.1      lubridate_1.7.9.2 
## [25] tidyr_1.1.3        dplyr_1.0.5        rtweet_0.7.0       clamour_0.1.0     
## 
## loaded via a namespace (and not attached):
##  [1] bitops_1.0-6       usethis_2.0.1      httr_1.4.2         rprojroot_2.0.2   
##  [5] SnowballC_0.7.0    tools_4.0.0        bslib_0.2.4        utf8_1.2.1        
##  [9] R6_2.5.0           DBI_1.1.1          colorspace_2.0-0   withr_2.4.1       
## [13] tidyselect_1.1.0   gridExtra_2.3      processx_3.4.5     curl_4.3          
## [17] compiler_4.0.0     cli_2.3.1          NLP_0.2-1          labeling_0.4.2    
## [21] slam_0.1-48        sass_0.3.1         scales_1.1.1       tm_0.7-8          
## [25] callr_3.5.1        askpass_1.1        digest_0.6.27      rmarkdown_2.7     
## [29] pkgconfig_2.0.3    htmltools_0.5.1.1  highr_0.8          rlang_0.4.10      
## [33] rstudioapi_0.13    jquerylib_0.1.3    farver_2.1.0       generics_0.1.0    
## [37] jsonlite_1.7.2     tokenizers_0.2.1   RCurl_1.98-1.2     magrittr_2.0.1    
## [41] modeltools_0.2-23  Matrix_1.3-2       Rcpp_1.0.6         munsell_0.5.0     
## [45] fansi_0.4.2        lifecycle_1.0.0    stringi_1.5.3      yaml_2.2.1        
## [49] debugme_1.1.0      MASS_7.3-53.1      plyr_1.8.6         grid_4.0.0        
## [53] parallel_4.0.0     crayon_1.4.1       lattice_0.20-41    graphlayouts_0.7.1
## [57] gridtext_0.1.4     ps_1.5.0           pillar_1.5.1       markdown_1.1      
## [61] reshape2_1.4.4     stats4_4.0.0       glue_1.4.2         evaluate_0.14     
## [65] selectr_0.4-2      vctrs_0.3.6        png_0.1-7          tweenr_1.0.1      
## [69] gtable_0.3.0       openssl_1.4.3      polyclip_1.10-0    assertthat_0.2.1  
## [73] xfun_0.21          ggforce_0.3.2      tidygraph_1.2.0    janeaustenr_0.1.5 
## [77] tibble_3.1.0       ellipsis_0.3.1

Single-Cell Open Problems

Open Problems in Single-Cell Analysis Jamboree 2021

Last built: 2021-04-01 10:34:28

Introduction

1 Timeline

1.1 Tweets by day

1.2 Tweets by day and time

2 Users

2.1 Top tweeters

Overall

Original

Retweets

2.2 Retweet proportion

2.3 Top tweeters timeline

2.4 Top tweeters by day

Overall

Day 1

Day 2

Day 3

Original

Day 1

Day 2

Day 3

Retweets

Day 1

Day 2

Day 3

3 Sources

Users

Tweets

4 Networks

4.1 Replies

4.2 Mentions

5 Tweet types

5.1 Retweets

Proportion

Count

Top 10

Most retweeted

5.2 Likes

Proportion

Count

Top 10

Most likes

5.3 Quotes

Proportion

Count

Top 10

Most quoted

6 Media

Proportion

Top 10

6.1 Most liked image

7 Tweet text

7.1 Word cloud

7.2 Hashtags

7.3 Emojis

7.4 Bigram graph

7.5 Topic modelling

7.5.1 Representative tweets

Topic 1

Topic 2

Topic 3

Topic 4

Topic 5

Topic 6

8 Links

Session info